DBAli tools: mining the protein structure space

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2007
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  • DOI 10.1093/nar/gkm236
  • PMID https://pubmed.ncbi.nlm.nih.gov/17478513
  • OpenAlex ID W2084743099
  • Type Article
  • Language EN
  • Published 04 May 2007
  • Volume 35 (Web Server)
  • Pages W393–W397
  • Source Nucleic Acids Research
  • Publisher Oxford University Press
  • FWCI 1.79
  • Countries 2
  • Institutions 2
  • Added 10 Oct 2025
  • Updated 15 Oct 2026
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DBAli tools: mining the protein structure space

Article 2007 EN Gold

The DBAli tools use a comprehensive set of structural alignments in the DBAli database to leverage the structural information deposited in the Protein Data Bank (PDB). These tools include (i) the DBAlit program that allows users to input the 3D coordinates of a protein structure for comparison by MAMMOTH against all chains in the PDB; (ii) the AnnoLite and AnnoLyze programs that annotate a target…

27

Citations

29

References

9

Authors

1.79

FWCI

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9 authors
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1 Marc A. Martı́-Renom University of California, San … (US)
2 Ursula Pieper University of California, San … (US)
3 Mallur Srivatsan Madhusudhan University of California, San … (US)
4 A. Rossi University of California, San … (US) —
5 Narayanan Eswar University of California, San … (US)
6 Fred P. Davis University of California, San … (US)
7 Fátima Al‐Shahrour University of California, San … (US) Centro de Investigacion Princi… (ES)
8 Joaquı́n Dopazo University of California, San … (US) Centro de Investigacion Princi… (ES)
9 Andrej Šali University of California, San … (US)
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